(used for mutation description)
(last modified
February 5, 2011)
This file was created to facilitate the description of sequence variants in the COL6A3 gene based on a coding DNA reference sequence following the HGVS recommendations. The sequence was taken from NG_008676.1, covering COL6A3 transcript variant-1 (NM_004369.3). Exons 3 and 4 are alternatively spliced in transcript variants-5 (lacking exon 3, NM_057167.3) and -4 (lacking both, NM_057166.4). Transcript variants-3 (NM_057165.4) and -2 (NM_057164.4) use an alternative transcription termination site in intron 9 (exon 9b). In addition, transcript variant-3 skips exon 3 while variant-4 skips both exons 3 and 4.
Please note that introns are available by clicking on the exon numbers above the sequence.
(upstream sequence)
. . . . g.5045
aagccctgactggtatccctggccccagtccagtttggagctcag c.-241
. . . . . . g.5105
tcttccaccaaaggccgttcagttctcctgggctccagcctcctgcaaggactgcaagag c.-181
. . . . . . g.5165
ttttcctccgcagctctgagtctccacttttttggtggagaaaggctgcaaaaagaaaaa c.-121
. . . . . . g.5225
gagacgcagtgagtgggaaaagtatgcatcctattcaaacctaattgaatcgaggagccc c.-61
. . . | 2 . . g.22390
agggacacacgccttcaggtttgctcaggg | gttcatatttggtgcttagacaaattcaaa c.-1
. . . . . . g.22450
ATGAGGAAACATCGGCACTTGCCCTTAGTGGCCGTCTTTTGCCTCTTTCTCTCAGGCTTT c.60
M R K H R H L P L V A V F C L F L S G F p.20
. . . | 3 . . . g.24032
CCTACAACTCATGCCCAGCAGCAGCAAGCAG | ATGTCAAAAATGGTGCGGCTGCTGATATA c.120
P T T H A Q Q Q Q A D | V K N G A A A D I p.40
^ alternatively spliced exon
. . . . . . g.24092
ATATTTCTAGTGGATTCCTCTTGGACCATTGGAGAGGAACATTTCCAACTTGTTCGAGAG c.180
I F L V D S S W T I G E E H F Q L V R E p.60
. . . . . . g.24152
TTTCTATATGATGTTGTAAAATCCTTAGCTGTGGGAGAAAATGATTTCCATTTTGCTCTG c.240
F L Y D V V K S L A V G E N D F H F A L p.80
. . . . . . g.24212
GTCCAGTTCAACGGAAACCCACATACCGAGTTCCTGTTAAATACGTATCGTACTAAACAA c.300
V Q F N G N P H T E F L L N T Y R T K Q p.100
. . . . . . g.24272
GAAGTCCTTTCTCATATTTCCAACATGTCTTATATTGGGGGAACCAATCAGACTGGAAAA c.360
E V L S H I S N M S Y I G G T N Q T G K p.120
. . . . . . g.24332
GGATTAGAATACATAATGCAAAGCCACCTCACCAAGGCTGCTGGAAGCCGGGCCGGTGAC c.420
G L E Y I M Q S H L T K A A G S R A G D p.140
. . . . . . g.24392
GGAGTCCCTCAGGTTATCGTAGTGTTAACTGATGGACACTCGAAGGATGGCCTTGCTCTG c.480
G V P Q V I V V L T D G H S K D G L A L p.160
. . . . . . g.24452
CCCTCAGCGGAACTTAAGTCTGCTGATGTTAACGTGTTTGCAATTGGAGTTGAGGATGCA c.540
P S A E L K S A D V N V F A I G V E D A p.180
. . . . . . g.24512
GATGAAGGAGCGTTAAAAGAAATAGCAAGTGAACCGCTCAATATGCATATGTTCAACCTA c.600
D E G A L K E I A S E P L N M H M F N L p.200
. . . . . . g.24572
GAGAATTTTACCTCACTTCATGACATAGTAGGAAACTTAGTGTCCTGTGTGCATTCATCC c.660
E N F T S L H D I V G N L V S C V H S S p.220
. . . . | 4 . g.31034
GTGAGTCCAGAAAGGGCTGGGGACACGGAAACCCTTAAAGACATCACAG | CACAAGACTCT c.720
V S P E R A G D T E T L K D I T A | Q D S p.240
^ alternatively spliced exon
. . . . . . g.31094
GCTGACATTATTTTCCTTATTGATGGATCAAACAACACCGGAAGTGTCAATTTCGCAGTC c.780
A D I I F L I D G S N N T G S V N F A V p.260
. . . . . . g.31154
ATTCTCGACTTCCTTGTAAATCTCCTTGAGAAACTCCCAATTGGAACTCAGCAGATCCGA c.840
I L D F L V N L L E K L P I G T Q Q I R p.280
. . . . . . g.31214
GTGGGGGTGGTCCAGTTTAGCGATGAGCCCAGAACCATGTTCTCCTTGGACACCTACTCC c.900
V G V V Q F S D E P R T M F S L D T Y S p.300
. . . . . . g.31274
ACCAAGGCCCAGGTTCTGGGTGCAGTGAAAGCCCTCGGGTTTGCTGGTGGGGAGTTGGCC c.960
T K A Q V L G A V K A L G F A G G E L A p.320
. . . . . . g.31334
AATATCGGCCTCGCCCTTGATTTCGTGGTGGAGAACCACTTCACCCGGGCAGGGGGCAGC c.1020
N I G L A L D F V V E N H F T R A G G S p.340
. . . . . . g.31394
CGCGTGGAGGAAGGGGTTCCCCAGGTGCTGGTCCTCATAAGTGCCGGGCCTTCTAGTGAC c.1080
R V E E G V P Q V L V L I S A G P S S D p.360
. . . . . . g.31454
GAGATTCGCTACGGGGTGGTAGCACTGAAGCAGGCTAGCGTGTTCTCATTCGGCCTTGGA c.1140
E I R Y G V V A L K Q A S V F S F G L G p.380
. . . . . . g.31514
GCCCAGGCCGCCTCCAGGGCAGAGCTTCAGCACATAGCTACCGATGACAACTTGGTGTTT c.1200
A Q A A S R A E L Q H I A T D D N L V F p.400
. . . . . . g.31574
ACTGTCCCGGAATTCCGTAGCTTTGGGGACCTCCAGGAGAAATTACTGCCGTACATTGTT c.1260
T V P E F R S F G D L Q E K L L P Y I V p.420
. . . . . | 5 . g.37716
GGCGTGGCCCAAAGGCACATTGTCTTGAAACCGCCAACCATTGTCACACAAG | TCATTGAA c.1320
G V A Q R H I V L K P P T I V T Q V | I E p.440
. . . . . . g.37776
GTCAACAAGAGAGACATAGTCTTCCTGGTGGATGGCTCATCTGCACTGGGACTGGCCAAC c.1380
V N K R D I V F L V D G S S A L G L A N p.460
. . . . . . g.37836
TTCAATGCCATCCGAGACTTCATTGCTAAAGTCATCCAGAGGCTGGAAATCGGACAGGAT c.1440
F N A I R D F I A K V I Q R L E I G Q D p.480
. . . . . . g.37896
CTTATCCAGGTGGCAGTGGCCCAGTATGCAGACACTGTGAGGCCTGAATTTTATTTCAAT c.1500
L I Q V A V A Q Y A D T V R P E F Y F N p.500
. . . . . . g.37956
ACCCATCCAACAAAAAGGGAAGTCATAACCGCTGTGCGGAAAATGAAGCCCCTGGACGGC c.1560
T H P T K R E V I T A V R K M K P L D G p.520
. . . . . . g.38016
TCGGCCCTGTACACGGGCTCTGCTCTAGACTTTGTTCGTAACAACCTATTCACGAGTTCA c.1620
S A L Y T G S A L D F V R N N L F T S S p.540
. . . . . . g.38076
GCCGGCTACCGGGCTGCCGAGGGGATTCCTAAGCTTTTGGTGCTGATCACAGGTGGTAAG c.1680
A G Y R A A E G I P K L L V L I T G G K p.560
. . . . . . g.38136
TCCCTAGATGAAATCAGCCAGCCTGCCCAGGAGCTGAAGAGAAGCAGCATAATGGCCTTT c.1740
S L D E I S Q P A Q E L K R S S I M A F p.580
. . . . . . g.38196
GCCATTGGGAACAAGGGTGCCGATCAGGCTGAGCTGGAAGAGATCGCTTTCGACTCCTCC c.1800
A I G N K G A D Q A E L E E I A F D S S p.600
. . . . . . g.38256
CTGGTGTTCATCCCAGCTGAGTTCCGAGCCGCCCCATTGCAAGGCATGCTGCCTGGCTTG c.1860
L V F I P A E F R A A P L Q G M L P G L p.620
. . . | 6 . . . g.39995
CTGGCACCTCTCAGGACCCTCTCTGGAACCCCTGAAG | TTCACTCAAACAAAAGGGATATC c.1920
L A P L R T L S G T P E V | H S N K R D I p.640
. . . . . . g.40055
ATCTTTCTTTTGGATGGATCAGCCAACGTTGGAAAAACCAATTTCCCTTATGTGCGCGAC c.1980
I F L L D G S A N V G K T N F P Y V R D p.660
. . . . . . g.40115
TTTGTAATGAACCTAGTTAACAGCCTTGATATTGGAAATGACAATATTCGTGTTGGTTTA c.2040
F V M N L V N S L D I G N D N I R V G L p.680
. . . . . . g.40175
GTGCAATTTAGTGACACTCCTGTAACGGAGTTCTCTTTAAACACATACCAGACCAAGTCA c.2100
V Q F S D T P V T E F S L N T Y Q T K S p.700
. . . . . . g.40235
GATATCCTTGGTCATCTGAGGCAGCTGCAGCTCCAGGGAGGTTCGGGCCTGAACACAGGC c.2160
D I L G H L R Q L Q L Q G G S G L N T G p.720
. . . . . . g.40295
TCAGCCCTAAGCTATGTCTATGCCAACCACTTCACGGAAGCTGGCGGCAGCAGGATCCGT c.2220
S A L S Y V Y A N H F T E A G G S R I R p.740
. . . . . . g.40355
GAACACGTGCCGCAGCTCCTGCTTCTGCTCACAGCTGGGCAGTCTGAGGACTCCTATTTG c.2280
E H V P Q L L L L L T A G Q S E D S Y L p.760
. . . . . . g.40415
CAAGCTGCCAACGCCTTGACACGCGCGGGCATCCTGACTTTTTGTGTGGGAGCTAGCCAG c.2340
Q A A N A L T R A G I L T F C V G A S Q p.780
. . . . . . g.40475
GCGAATAAGGCAGAGCTTGAGCAGATTGCTTTTAACCCAAGCCTGGTGTATCTCATGGAT c.2400
A N K A E L E Q I A F N P S L V Y L M D p.800
. . . . . . g.40535
GATTTCAGCTCCCTGCCAGCTTTGCCTCAGCAGCTGATTCAGCCCCTAACCACATATGTT c.2460
D F S S L P A L P Q Q L I Q P L T T Y V p.820
. . . | 7 . . . g.41886
AGTGGAGGTGTGGAGGAAGTACCACTCGCTCAGCCAG | AGAGCAAGCGAGACATTCTGTTC c.2520
S G G V E E V P L A Q P E | S K R D I L F p.840
. . . . . . g.41946
CTCTTTGACGGCTCAGCCAATCTTGTGGGCCAGTTCCCTGTTGTCCGTGACTTTCTCTAC c.2580
L F D G S A N L V G Q F P V V R D F L Y p.860
. . . . . . g.42006
AAGATTATCGATGAGCTCAATGTGAAGCCAGAGGGGACCCGAATTGCGGTGGCTCAGTAC c.2640
K I I D E L N V K P E G T R I A V A Q Y p.880
. . . . . . g.42066
AGCGATGATGTCAAGGTGGAGTCCCGTTTTGATGAGCACCAGAGTAAGCCTGAGATCCTG c.2700
S D D V K V E S R F D E H Q S K P E I L p.900
. . . . . . g.42126
AATCTTGTGAAGAGAATGAAGATCAAGACGGGCAAAGCCCTCAACCTGGGCTACGCGCTG c.2760
N L V K R M K I K T G K A L N L G Y A L p.920
. . . . . . g.42186
GACTATGCACAGAGGTACATTTTTGTGAAGTCTGCTGGCAGCCGGATCGAGGATGGAGTG c.2820
D Y A Q R Y I F V K S A G S R I E D G V p.940
. . . . . . g.42246
CTTCAGTTCCTGGTGCTGCTGGTCGCAGGAAGGTCATCTGACCGTGTGGATGGGCCAGCA c.2880
L Q F L V L L V A G R S S D R V D G P A p.960
. . . . . . g.42306
AGTAACCTGAAGCAGAGTGGGGTTGTGCCTTTCATCTTCCAAGCCAAGAACGCAGACCCT c.2940
S N L K Q S G V V P F I F Q A K N A D P p.980
. . . . . . g.42366
GCTGAGTTAGAGCAGATCGTGCTGTCTCCAGCGTTTATCCTGGCTGCAGAGTCGCTTCCC c.3000
A E L E Q I V L S P A F I L A A E S L P p.1000
. . . . . . g.42426
AAGATTGGAGATCTTCATCCACAGATAGTGAATCTCTTAAAATCAGTGCACAACGGAGCA c.3060
K I G D L H P Q I V N L L K S V H N G A p.1020
. | 8 . . . . . g.44237
CCAGCACCAG | TTTCAGGTGAAAAGGACGTGGTGTTTCTGCTTGATGGCTCTGAGGGCGTC c.3120
P A P V | S G E K D V V F L L D G S E G V p.1040
. . . . . . g.44297
AGGAGCGGCTTCCCTCTGTTGAAAGAGTTTGTCCAGAGAGTGGTGGAAAGCCTGGATGTG c.3180
R S G F P L L K E F V Q R V V E S L D V p.1060
. . . . . . g.44357
GGCCAGGACCGGGTCCGCGTGGCCGTGGTGCAGTACAGCGACCGGACCAGGCCCGAGTTC c.3240
G Q D R V R V A V V Q Y S D R T R P E F p.1080
. . . . . . g.44417
TACCTGAATTCATACATGAACAAGCAGGACGTCGTCAACGCTGTCCGCCAGCTGACCCTG c.3300
Y L N S Y M N K Q D V V N A V R Q L T L p.1100
. . . . . . g.44477
CTGGGAGGGCCGACCCCCAACACCGGGGCCGCCCTGGAGTTTGTCCTGAGGAACATCCTG c.3360
L G G P T P N T G A A L E F V L R N I L p.1120
. . . . . . g.44537
GTCAGCTCTGCGGGAAGCAGGATAACAGAAGGTGTGCCCCAGCTGCTGATCGTCCTCACG c.3420
V S S A G S R I T E G V P Q L L I V L T p.1140
. . . . . . g.44597
GCCGACAGGTCTGGGGATGATGTGCGGAACCCCTCCGTGGTCGTGAAGAGGGGTGGGGCT c.3480
A D R S G D D V R N P S V V V K R G G A p.1160
. . . . . . g.44657
GTGCCCATTGGCATTGGCATCGGGAACGCTGACATCACAGAGATGCAGACCATCTCCTTC c.3540
V P I G I G I G N A D I T E M Q T I S F p.1180
. . . . . . g.44717
ATCCCGGACTTTGCCGTGGCCATTCCCACCTTTCGCCAGCTGGGGACCGTCCAACAGGTC c.3600
I P D F A V A I P T F R Q L G T V Q Q V p.1200
. . . . . . g.44777
ATCTCTGAGAGGGTGACCCAGCTCACCCGCGAGGAGCTGAGCAGGCTGCAGCCGGTGTTG c.3660
I S E R V T Q L T R E E L S R L Q P V L p.1220
. | 9 . . . . g.46911
CAGCCTCTACCGAGCCCAG | GTGTTGGTGGCAAGAGGGACGTGGTCTTTCTCATCGATGGG c.3720
Q P L P S P G | V G G K R D V V F L I D G p.1240
. . . . . . g.46971
TCCCAAAGTGCCGGGCCTGAGTTCCAGTACGTTCGCACCCTCATAGAGAGGCTGGTTGAC c.3780
S Q S A G P E F Q Y V R T L I E R L V D p.1260
. . . . . . g.47031
TACCTGGACGTGGGCTTTGACACCACCCGGGTGGCTGTCATCCAGTTCAGCGATGACCCC c.3840
Y L D V G F D T T R V A V I Q F S D D P p.1280
. . . . . . g.47091
AAGGTGGAGTTCCTGCTGAACGCCCATTCCAGCAAGGATGAAGTGCAGAACGCGGTGCAG c.3900
K V E F L L N A H S S K D E V Q N A V Q p.1300
. . . . . . g.47151
CGGCTGAGGCCCAAGGGAGGGCGGCAGATCAACGTGGGCAATGCCCTGGAGTACGTGTCC c.3960
R L R P K G G R Q I N V G N A L E Y V S p.1320
. . . . . . g.47211
AGGAACATCTTCAAGAGGCCCCTGGGGAGCCGCATTGAAGAGGGCGTCCCGCAGTTCCTG c.4020
R N I F K R P L G S R I E E G V P Q F L p.1340
. . . . . . g.47271
GTCCTCATCTCGTCTGGAAAGTCTGACGATGAGGTGGACGACCCGGCGGTGGAGCTCAAG c.4080
V L I S S G K S D D E V D D P A V E L K p.1360
. . . . . . g.47331
CAGTTTGGCGTGGCCCCTTTCACGATCGCCAGGAACGCAGACCAGGAGGAGCTGGTGAAG c.4140
Q F G V A P F T I A R N A D Q E E L V K p.1380
. . . . . . g.47391
ATCTCGCTGAGCCCCGAATATGTGTTCTCGGTGAGCACCTTCCGGGAGCTGCCCAGCCTG c.4200
I S L S P E Y V F S V S T F R E L P S L p.1400
. . . . . . g.47451
GAGCAGAAACTGCTGACGCCCATCACGACCCTGACCTCAGAGCAGATCCAGAAGCTCTTA c.4260
E Q K L L T P I T T L T S E Q I Q K L L p.1420
. . | 10 . . . . g.50065
GCCAGCACTCGCTATCCACCTCCAG | CAGTTGAGAGTGATGCTGCAGACATTGTCTTTCTG c.4320
A S T R Y P P P A | V E S D A A D I V F L p.1440
. . . . . . g.50125
ATCGACAGCTCTGAGGGAGTTAGGCCAGATGGCTTTGCACATATTCGAGATTTTGTTAGC c.4380
I D S S E G V R P D G F A H I R D F V S p.1460
. . . . . . g.50185
AGGATTGTTCGAAGACTCAACATCGGCCCCAGTAAAGTGAGAGTTGGGGTCGTGCAGTTC c.4440
R I V R R L N I G P S K V R V G V V Q F p.1480
. . . . . . g.50245
AGCAATGATGTCTTCCCAGAATTCTATCTGAAAACCTACAGATCCCAGGCCCCGGTGCTG c.4500
S N D V F P E F Y L K T Y R S Q A P V L p.1500
. . . . . . g.50305
GACGCCATACGGCGCCTGAGGCTCAGAGGGGGGTCCCCACTGAACACTGGCAAGGCTCTC c.4560
D A I R R L R L R G G S P L N T G K A L p.1520
. . . . . . g.50365
GAATTTGTGGCAAGAAACCTCTTTGTTAAGTCTGCGGGGAGTCGCATAGAAGACGGGGTG c.4620
E F V A R N L F V K S A G S R I E D G V p.1540
. . . . . . g.50425
CCCCAACACCTGGTCCTGGTCCTGGGTGGAAAATCCCAGGACGATGTGTCCAGGTTCGCC c.4680
P Q H L V L V L G G K S Q D D V S R F A p.1560
. . . . . . g.50485
CAGGTGATCCGTTCCTCGGGCATTGTGAGTTTAGGGGTAGGAGACCGGAACATCGACAGA c.4740
Q V I R S S G I V S L G V G D R N I D R p.1580
. . . . . . g.50545
ACAGAGCTGCAGACCATCACCAATGACCCCAGACTGGTCTTCACAGTGCGAGAGTTCAGA c.4800
T E L Q T I T N D P R L V F T V R E F R p.1600
. . . . . . g.50605
GAGCTTCCCAACATAGAAGAAAGAATCATGAACTCGTTTGGACCCTCCGCAGCCACTCCT c.4860
E L P N I E E R I M N S F G P S A A T P p.1620
. . . . | 11 . . g.51941
GCACCTCCAGGGGTGGACACCCCTCCTCCTTCACGGCCAG | AGAAGAAGAAAGCAGACATT c.4920
A P P G V D T P P P S R P E | K K K A D I p.1640
. . . . . . g.52001
GTGTTCCTGTTGGATGGTTCCATCAACTTCAGGAGGGACAGTTTCCAGGAAGTGCTTCGT c.4980
V F L L D G S I N F R R D S F Q E V L R p.1660
. . . . . . g.52061
TTTGTGTCTGAAATAGTGGACACAGTTTATGAAGATGGCGACTCCATCCAAGTGGGGCTT c.5040
F V S E I V D T V Y E D G D S I Q V G L p.1680
. . . . . . g.52121
GTCCAGTACAACTCTGACCCCACTGACGAATTCTTCCTGAAGGACTTCTCTACCAAGAGG c.5100
V Q Y N S D P T D E F F L K D F S T K R p.1700
. . . . . . g.52181
CAGATTATTGACGCCATCAACAAAGTGGTCTACAAAGGGGGAAGACACGCCAACACTAAG c.5160
Q I I D A I N K V V Y K G G R H A N T K p.1720
. . . . . . g.52241
GTGGGCCTTGAGCACCTGCGGGTAAACCACTTTGTGCCTGAGGCAGGCAGCCGCCTGGAC c.5220
V G L E H L R V N H F V P E A G S R L D p.1740
. . . . . . g.52301
CAGCGGGTCCCTCAGATTGCCTTTGTGATCACGGGAGGAAAGTCGGTGGAAGATGCACAG c.5280
Q R V P Q I A F V I T G G K S V E D A Q p.1760
. . . . . . g.52361
GATGTGAGCCTGGCCCTCACCCAGAGGGGGGTCAAAGTGTTTGCTGTTGGAGTGAGGAAT c.5340
D V S L A L T Q R G V K V F A V G V R N p.1780
. . . . . . g.52421
ATCGACTCGGAGGAGGTTGGAAAGATAGCGTCCAACAGCGCCACAGCGTTCCGCGTGGGC c.5400
I D S E E V G K I A S N S A T A F R V G p.1800
. . . . . . g.52481
AACGTCCAGGAGCTGTCCGAACTGAGCGAGCAAGTTTTGGAAACTTTGCATGATGCGATG c.5460
N V Q E L S E L S E Q V L E T L H D A M p.1820
. . . . | 12 . . g.53192
CATGAAACCCTTTGCCCTGGTGTAACTGATGCTGCCAAAG | CTTGTAATCTGGATGTGATT c.5520
H E T L C P G V T D A A K A | C N L D V I p.1840
. . . . . . g.53252
CTGGGGTTTGATGGTTCTAGAGACCAGAATGTTTTTGTGGCCCAGAAGGGCTTCGAGTCC c.5580
L G F D G S R D Q N V F V A Q K G F E S p.1860
. . . . . . g.53312
AAGGTGGACGCCATCTTGAACAGAATCAGCCAGATGCACAGGGTCAGCTGCAGCGGTGGC c.5640
K V D A I L N R I S Q M H R V S C S G G p.1880
. . . . . . g.53372
CGCTCGCCCACCGTGCGTGTGTCAGTGGTGGCCAACACGCCCTCGGGCCCGGTGGAGGCC c.5700
R S P T V R V S V V A N T P S G P V E A p.1900
. . . . . . g.53432
TTTGACTTTGACGAGTACCAGCCAGAGATGCTCGAGAAGTTCCGGAACATGCGCAGCCAG c.5760
F D F D E Y Q P E M L E K F R N M R S Q p.1920
. . . . . . g.53492
CACCCCTACGTCCTCACGGAGGACACCCTGAAGGTCTACCTGAACAAGTTCAGACAGTCC c.5820
H P Y V L T E D T L K V Y L N K F R Q S p.1940
. | 13 . . . . g.54821
TCGCCGGACAGCGTGAAG | GTGGTCATTCATTTTACTGATGGAGCAGACGGAGATCTGGCT c.5880
S P D S V K | V V I H F T D G A D G D L A p.1960
. . . | 14. . . g.55832
GATTTACACAGAGCATCTGAGAACCTCCGCCAAGAAG | GAGTCCGTGCCTTGATCCTGGTG c.5940
D L H R A S E N L R Q E G | V R A L I L V p.1980
. . . . . . g.55892
GGCCTTGAACGAGTGGTCAACTTGGAGCGGCTAATGCATCTGGAGTTTGGGCGAGGGTTT c.6000
G L E R V V N L E R L M H L E F G R G F p.2000
. . . . . . g.55952
ATGTATGACAGGCCCCTGAGGCTTAACTTGCTGGACTTGGATTATGAACTAGCGGAGCAG c.6060
M Y D R P L R L N L L D L D Y E L A E Q p.2020
| 15 . . . . . . g.57433
CTT | GACAACATTGCCGAGAAAGCTTGCTGTGGGGTTCCCTGCAAGTGCTCTGGGCAGAGG c.6120
L | D N I A E K A C C G V P C K C S G Q R p.2040
. . . | 16 . . . g.58057
GGAGACCGCGGGCCCATCGGCAGCATCGGGCCAAAG | GGTATTCCTGGAGAAGACGGCTAC c.6180
G D R G P I G S I G P K | G I P G E D G Y p.2060
. . . | 17 . . . g.59078
CGAGGCTATCCTGGTGATGAGGGTGGACCC | GGTGAGCGTGGTCCGCCTGGTGTGAACGGC c.6240
R G Y P G D E G G P | G E R G P P G V N G p.2080
. . . . | 18 . . g.59837
ACTCAAGGTTTCCAGGGCTGCCCGGGCCAGAGAGGAGTAAAG | GGCTCTCGGGGATTCCCA c.6300
T Q G F Q G C P G Q R G V K | G S R G F P p.2100
| 19 . . . . | 20 . g.60125
GGAGAGAAG | GGCGAAGTAGGAGAAATTGGACTGGATGGTCTGGATGGTGAAGAT | GGAGAC c.6360
G E K | G E V G E I G L D G L D G E D | G D p.2120
. . . . | 21 . g.60636
AAAGGATTGCCTGGTTCTTCTGGAGAGAAAGGGAATCCTGGAAGAAGG | GGTGATAAAGGA c.6420
K G L P G S S G E K G N P G R R | G D K G p.2140
. . . . . | 22 . g.61334
CCTCGAGGAGAGAAAGGAGAAAGAGGAGATGTTGGGATTCGAGGGGACCCG | GGTAACCCA c.6480
P R G E K G E R G D V G I R G D P | G N P p.2160
. . . . . | 23. g.61819
GGACAAGACAGCCAGGAGAGAGGACCCAAAGGAGAAACCGGTGACCTCGGCCCCATG | GGT c.6540
G Q D S Q E R G P K G E T G D L G P M | G p.2180
. . . . . | 24 . g.64282
GTCCCAGGGAGAGATGGAGTACCTGGAGGACCTGGAGAAACTGGGAAGAAT | GGTGGCTTT c.6600
V P G R D G V P G G P G E T G K N | G G F p.2200
. . | 25. . . . g.65837
GGCCGAAGGGGACCCCCCGGAGCTAAG | GGCAACAAGGGCGGTCCTGGCCAGCCGGGCTTT c.6660
G R R G P P G A K | G N K G G P G Q P G F p.2220
. . . | 26 . . . g.66653
GAGGGAGAGCAGGGGACCAGAGGTGCACAG | GGCCCAGCTGGTCCTGCTGGTCCTCCAGGG c.6720
E G E Q G T R G A Q | G P A G P A G P P G p.2240
. . . | 27 . . . g.68042
CTGATAGGAGAACAAGGCATTTCTGGACCTCGG | GGAAGCGGAGGTGCCGCTGGTGCTCCT c.6780
L I G E Q G I S G P R | G S G G A A G A P p.2260
. . . | 28 . . . g.69022
GGAGAACGAGGCAGAACCGGTCCACTGGGAAGAAAG | GGTGAGCCCGGAGAGCCAGGACCA c.6840
G E R G R T G P L G R K | G E P G E P G P p.2280
. . . | 29 . . g.70565
AAAGGAGGAATCGGGAACCGGGGCCCTCGTGGGGAGACG | GGAGATGACGGGAGAGACGGA c.6900
K G G I G N R G P R G E T | G D D G R D G p.2300
. . . | 30 . . . g.70853
GTTGGCAGTGAAGGACGCAGAGGCAAAAAA | GGAGAAAGAGGATTCCCTGGATACCCAGGA c.6960
V G S E G R R G K K | G E R G F P G Y P G p.2320
| 31 . . . . . . g.71392
CCAAAG | GGTAACCCAGGTGAACCTGGGCTAAATGGAACAACAGGACCCAAAGGCATCAGA c.7020
P K | G N P G E P G L N G T T G P K G I R p.2340
| 32 . . . . . g.72693
GGCCGAAGG | GGAAATTCGGGACCTCCAGGGATAGTTGGACAGAAGGGAGACCCTGGCTAC c.7080
G R R | G N S G P P G I V G Q K G D P G Y p.2360
. | 33 . . . | 34 . . g.74128
CCAGGACCAGCT | GGTCCCAAGGGCAACAGGGGCGACTCCATCGAT | CAATGTGCCCTCATC c.7140
P G P A | G P K G N R G D S I D | Q C A L I p.2380
. . | 35 . | 36 . . . g.74390
CAAAGCATCAAAGATAAATGCC | CTTGCTGTTACG | GGCCCCTGGAGTGCCCCGTCTTCCCA c.7200
Q S I K D K C P | C C Y G | P L E C P V F P p.2400
. . . . . . g.74450
ACAGAACTAGCCTTTGCTTTAGACACCTCTGAGGGAGTCAACCAAGACACTTTCGGCCGG c.7260
T E L A F A L D T S E G V N Q D T F G R p.2420
. . . . . . g.74510
ATGCGAGATGTGGTCTTGAGTATTGTGAATGACCTGACCATTGCTGAGAGCAACTGCCCA c.7320
M R D V V L S I V N D L T I A E S N C P p.2440
. . . . . . g.74570
CGGGGGGCCCGGGTGGCTGTGGTCACCTACAACAACGAGGTGACCACGGAGATCCGGTTT c.7380
R G A R V A V V T Y N N E V T T E I R F p.2460
. . . . . . g.74630
GCTGACTCCAAGAGGAAGTCGGTCCTCCTGGACAAGATTAAGAACCTTCAGGTGGCTCTG c.7440
A D S K R K S V L L D K I K N L Q V A L p.2480
. . . . . . g.74690
ACATCCAAACAGCAGAGTCTGGAGACTGCCATGTCGTTTGTGGCCAGGAACACATTTAAG c.7500
T S K Q Q S L E T A M S F V A R N T F K p.2500
. . . . . . g.74750
CGTGTGAGGAACGGATTCCTAATGAGGAAAGTGGCTGTTTTCTTCAGCAACACACCCACA c.7560
R V R N G F L M R K V A V F F S N T P T p.2520
. . . . . . g.74810
AGAGCATCCCCACAGCTCAGAGAGGCTGTGCTCAAGCTCTCAGATGCGGGGATCACCCCC c.7620
R A S P Q L R E A V L K L S D A G I T P p.2540
. . . . | 37 . g.77058
TTGTTCCTTACAAGGCAGGAAGACCGGCAGCTCATCAACGCTTTGCAG | ATCAATAACACA c.7680
L F L T R Q E D R Q L I N A L Q | I N N T p.2560
. . . . . . g.77118
GCAGTGGGGCATGCGCTTGTCCTGCCTGCAGGGAGAGACCTCACAGACTTCCTGGAGAAT c.7740
A V G H A L V L P A G R D L T D F L E N p.2580
. . | 38 . . . . g.78092
GTCCTCACGTGTCATGTTTGCTTGG | ACATCTGCAACATCGACCCATCCTGTGGATTTGGC c.7800
V L T C H V C L D | I C N I D P S C G F G p.2600
. . . . . . g.78152
AGTTGGAGGCCTTCCTTCAGGGACAGGAGAGCGGCAGGGAGCGATGTGGACATCGACATG c.7860
S W R P S F R D R R A A G S D V D I D M p.2620
. . . . . . g.78212
GCTTTCATCTTAGACAGCGCTGAGACCACCACCCTGTTCCAGTTCAATGAGATGAAGAAG c.7920
A F I L D S A E T T T L F Q F N E M K K p.2640
. . . . . . g.78272
TACATAGCGTACCTGGTCAGACAACTGGACATGAGCCCAGATCCCAAGGCCTCCCAGCAC c.7980
Y I A Y L V R Q L D M S P D P K A S Q H p.2660
. . . . . . g.78332
TTCGCCAGAGTGGCAGTTGTGCAGCACGCGCCCTCTGAGTCCGTGGACAATGCCAGCATG c.8040
F A R V A V V Q H A P S E S V D N A S M p.2680
. . . . . . g.78392
CCACCTGTGAAGGTGGAATTCTCCCTGACTGACTATGGCTCCAAGGAGAAGCTGGTGGAC c.8100
P P V K V E F S L T D Y G S K E K L V D p.2700
. . . . . . g.78452
TTCCTCAGCAGGGGAATGACACAGTTGCAGGGAACCAGGGCCTTAGGCAGTGCCATTGAA c.8160
F L S R G M T Q L Q G T R A L G S A I E p.2720
. . . . . . g.78512
TACACCATAGAGAATGTCTTTGAAAGTGCCCCAAACCCACGGGACCTGAAAATTGTGGTC c.8220
Y T I E N V F E S A P N P R D L K I V V p.2740
. . . . . . g.78572
CTGATGCTGACGGGCGAGGTGCCGGAGCAGCAGCTGGAGGAGGCCCAGAGAGTCATCCTG c.8280
L M L T G E V P E Q Q L E E A Q R V I L p.2760
. . . . . . g.78632
CAGGCCAAATGCAAGGGCTACTTCTTCGTGGTCCTGGGCATTGGCAGGAAGGTGAACATC c.8340
Q A K C K G Y F F V V L G I G R K V N I p.2780
. . . . . . g.78692
AAGGAGGTATACACCTTCGCCAGTGAGCCAAACGACGTCTTCTTCAAATTAGTGGACAAG c.8400
K E V Y T F A S E P N D V F F K L V D K p.2800
. . . . . . g.78752
TCCACCGAGCTCAACGAGGAGCCTTTGATGCGCTTCGGGAGGCTGTTGCCATCCTTCGTC c.8460
S T E L N E E P L M R F G R L L P S F V p.2820
| 39 . . . . . . g.80146
AGCA | GTGAAAATGCTTTTTACTTGTCCCCAGATATCAGGAAACAGTGTGATTGGTTCCAA c.8520
S S | E N A F Y L S P D I R K Q C D W F Q p.2840
. . . . | 40. . g.82688
GGGGACCAACCCACAAAGAACCTTGTGAAGTTTGGTCACAAACAAGT | AAATGTTCCGAAT c.8580
G D Q P T K N L V K F G H K Q V | N V P N p.2860
. . . . . . g.82748
AACGTTACTTCAAGTCCTACATCCAACCCAGTGACGACAACGAAGCCGGTGACTACGACG c.8640
N V T S S P T S N P V T T T K P V T T T p.2880
. . . . . . g.82808
AAGCCGGTGACCACCACAACAAAGCCTGTAACCACCACAACAAAGCCTGTGACTATTATA c.8700
K P V T T T T K P V T T T T K P V T I I p.2900
. . . . . . g.82868
AATCAGCCATCTGTGAAGCCAGCCGCTGCAAAGCCGGCCCCTGCGAAACCTGTGGCTGCC c.8760
N Q P S V K P A A A K P A P A K P V A A p.2920
. . . . . . g.82928
AAGCCTGTGGCCACAAAGATGGCCACTGTTAGACCCCCAGTGGCGGTGAAGCCAGCAACG c.8820
K P V A T K M A T V R P P V A V K P A T p.2940
. . . . . . g.82988
GCAGCGAAGCCTGTAGCAGCAAAGCCAGCAGCTGTAAGACCCCCCGCTGCTGCTGCTGCA c.8880
A A K P V A A K P A A V R P P A A A A A p.2960
. . . . . . g.83048
AAACCAGTGGCGACCAAGCCTGAGGTCCCTAGGCCACAGGCAGCCAAACCAGCTGCCACC c.8940
K P V A T K P E V P R P Q A A K P A A T p.2980
. . | 41 . . . . g.84353
AAGCCAGCCACCACTAAGCCCATGG | TTAAGATGTCCCGTGAAGTCCAGGTGTTTGAGATA c.9000
K P A T T K P M V | K M S R E V Q V F E I p.3000
. . . . . . g.84413
ACAGAGAACAGCGCCAAACTCCACTGGGAGAGGGCTGAGCCCCCCGGTCCTTATTTTTAT c.9060
T E N S A K L H W E R A E P P G P Y F Y p.3020
. . . . . . g.84473
GACCTCACCGTCACCTCAGCCCATGATCAGTCCCTGGTTCTGAAGCAGAACCTCACGGTC c.9120
D L T V T S A H D Q S L V L K Q N L T V p.3040
. . . . . . g.84533
ACGGACCGCGTCATTGGAGGCCTGCTCGCTGGGCAGACATACCATGTGGCTGTGGTCTGC c.9180
T D R V I G G L L A G Q T Y H V A V V C p.3060
. . . . | 42 . g.85670
TACCTGAGGTCTCAGGTCAGAGCCACCTACCACGGAAGTTTCAGTACAA | AGAAATCTCAG c.9240
Y L R S Q V R A T Y H G S F S T K | K S Q p.3080
. . . . . . g.85730
CCCCCACCTCCACAGCCAGCAAGGTCAGCTTCTAGTTCAACCATCAATCTAATGGTGAGC c.9300
P P P P Q P A R S A S S S T I N L M V S p.3100
. . | 43 . . . g.93515
ACAGAACCATTGGCTCTCACTGAAACAG | ATATATGCAAGTTGCCGAAAGACGAAGGAACT c.9360
T E P L A L T E T D | I C K L P K D E G T p.3120
. . . . . . g.93575
TGCAGGGATTTCATATTAAAATGGTACTATGATCCAAACACCAAAAGCTGTGCAAGATTC c.9420
C R D F I L K W Y Y D P N T K S C A R F p.3140
. . . . . . g.93635
TGGTATGGAGGTTGTGGTGGAAACGAAAACAAATTTGGATCACAGAAAGAATGTGAAAAG c.9480
W Y G G C G G N E N K F G S Q K E C E K p.3160
. | 44 . . . . g.94440
GTTTGCGCTCCTG | TGCTCGCCAAACCCGGAGTCATCAGTGTGATGGGAACCTAA c.9534
V C A P V | L A K P G V I S V M G T X p.3177
. . . . . . g.94500
gcgtgggtggccaacatcatatacctcttgaagaagaaggagtcagccatcgccaacttg c.*60
. . . . . . g.94560
tctctgtagaagctccgggtgtagattcccttgcactgtatcatttcatgctttgattta c.*120
. . . . . . g.94620
cactcgaactcgggagggaacatcctgctgcatgacctatcagtatggtgctaatgtgtc c.*180
. . . . . . g.94680
tgtggaccctcgctctctgtctccaggcagttctctcgaatactttgaatgttgtgtaac c.*240
. . . . . . g.94740
agttagccactgctggtgtttatgtgaacattcctatcaatccaaattccctctggagtt c.*300
. . . . . . g.94800
tcatgttatgcctgttgcaggcaaatgtaaagtctagaaaataatgcaaatgtcacggct c.*360
. . . . . . g.94860
actctatatacttttgcttggttcattttttttcccttttagttaagcatgactttagat c.*420
. . . . . . g.94920
gggaagcctgtgtatcgtggagaaacaagagaccaactttttcattccctgcccccaatt c.*480
. . . . . . g.94980
tcccagactagatttcaagctaattttctttttctgaagcctctaacaaatgatctagtt c.*540
. . . . . . g.95040
cagaaggaagcaaaatcccttaatctatgtgcaccgttgggaccaatgccttaattaaag c.*600
. . . . . . g.95100
aatttaaaaaagttgtaatagagaatatttttggcattcctctaatgttgtgtgtttttt c.*660
. . . . . . g.95160
ttttgtgtgtgctggagggaggggatttaattttaattttaaaatgtttaggaaatttat c.*720
. . . . g.95202
acaaagaaactttttaataaagtatattgaaagtttcctggg c.*762
(downstream sequence)
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