LOVD - Variant listings for COL6A3

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Patient data (#0012773)
Phenotype myopathy, Bethlem (BM)
Phenotype additional -
Reference Baker 2007, JdD
Remarks -
Geographic origin United States
Ethnic origin -
Gender M
Inheritance unknown
Consanguinity -
Fam_Pat -
# reported 1
CK level normal
Protein data -
Submitter Johan den Dunnen

Variant data
Allele Parent #1
Reported pathogenicity No known pathogenicity
Concluded pathogenicity Unknown
Exon 30
DNA change c.6945C>T   (View in UCSC Genome Browser, Ensembl)
Var_pub_as 6945T>C
RNA change r.6945c>u
Protein change p.=
DB-ID COL6A3_00031
Variant remarks helix
Genet_ori germline (inherited)
Reference Baker 2007
Template DNA, RNA
Technique RT-PCR, PTT, SEQ
Frequency -
RE-site -

3 entries in COL6A1

Path.
Allele Descending
Ascending
Exon Descending
Ascending
DNA change Descending
Ascending
Var_pub_as Descending
Ascending
RNA change Descending
Ascending
Protein change Descending
Ascending
DB-ID Descending
Ascending
Variant remarks Descending
Ascending
Genet_ori Descending
Ascending
Reference Descending
Ascending
Template Descending
Ascending
Technique Descending
Ascending
Frequency Descending
Ascending
RE-site Descending
Ascending
-/? Unknown 15 c.1095T>C - r.1095u>c p.= COL6A1_00030 helix germline (inherited) Baker 2007 DNA, RNA RT-PCR, PTT, SEQ - -
-/? Unknown 35 c.2549G>A - r.2549g>a p.Arg850His COL6A1_00031 C2 germline (inherited) Baker 2007 DNA, RNA RT-PCR, PTT, SEQ - -
-/? Unknown 35 c.2667G>A - r.2667g>a p.= COL6A1_00033 C2 germline (inherited) Baker 2007 DNA, RNA RT-PCR, PTT, SEQ - -

8 entries in COL6A2

Path.
Allele Descending
Ascending
Exon Descending
Ascending
DNA change Descending
Ascending
Var_pub_as Descending
Ascending
RNA change Descending
Ascending
Protein change Descending
Ascending
DB-ID Descending
Ascending
Variant remarks Descending
Ascending
Genet_ori Descending
Ascending
Segregation Descending
Ascending
Reference Descending
Ascending
Template Descending
Ascending
Technique Descending
Ascending
Frequency Descending
Ascending
RE-site Descending
Ascending
-/? Parent #1 3 c.679G>A 679A>G r.679a>g p.Asp227Asn COL6A2_00031 N1 germline (inherited) - Baker 2007 DNA, RNA RT-PCR, PTT, SEQ - -
-/? Parent #2 3 c.679G>A 679A>G r.679a>g p.Asp227Asn COL6A2_00031 N1 germline (inherited) - Baker 2007 DNA, RNA RT-PCR, PTT, SEQ - -
-/? Unknown 14 c.1196A>G - r.1196a>g p.Asn399Ser COL6A2_00033 helix germline (inherited) - Baker 2007 DNA, RNA RT-PCR, PTT, SEQ - -
-/? Unknown 26 c.2039G>A 2039A>G r.2039g>a p.Arg680His COL6A2_00035 C1 germline (inherited) - Baker 2007 DNA, RNA RT-PCR, PTT, SEQ - -
-/? Unknown 26 c.2094G>A - r.2094g>a p.= COL6A2_00036 C1 germline (inherited) - Baker 2007 DNA, RNA RT-PCR, PTT, SEQ - -
-/? Unknown 26 c.2097C>T - r.2097c>u p.= COL6A2_00037 C1 germline (inherited) - Baker 2007 DNA, RNA RT-PCR, PTT, SEQ - -
-/? Unknown 26 c.2184G>A - r.2184g>a p.= COL6A2_00038 C1 germline (inherited) - Baker 2007 DNA, RNA RT-PCR, PTT, SEQ - -
-/? Unknown 28 c.2697G>T 2697T>G r.2697g>u p.= COL6A2_00039 C2 germline (inherited) - Baker 2007 DNA, RNA RT-PCR, PTT, SEQ - -

23 entries in COL6A3

Path.
Allele Descending
Ascending
Exon Descending
Ascending
DNA change Descending
Ascending
Var_pub_as Descending
Ascending
RNA change Descending
Ascending
Protein change Descending
Ascending
DB-ID Descending
Ascending
Variant remarks Descending
Ascending
Genet_ori Descending
Ascending
Reference Descending
Ascending
Template Descending
Ascending
Technique Descending
Ascending
Frequency Descending
Ascending
RE-site Descending
Ascending
-/? Unknown 5 c.1389C>T - r.1389c>u p.= COL6A3_00022 N8 germline (inherited) Baker 2007 DNA, RNA RT-PCR, PTT, SEQ - -
-/? Unknown 8 c.3129C>T - r.3129c>u p.= COL6A3_00023 N5 germline (inherited) Baker 2007 DNA, RNA RT-PCR, PTT, SEQ - -
-/? Unknown 10 c.4311T>C - r.4311u>c p.= COL6A3_00024 N3 germline (inherited) Baker 2007 DNA, RNA RT-PCR, PTT, SEQ - -
-/? Unknown 10 c.4533G>T - r.4533g>u p.= COL6A3_00025 N3 germline (inherited) Baker 2007 DNA, RNA RT-PCR, PTT, SEQ - -
-/? Unknown 28 c.6855G>C - r.6855g>c p.= COL6A3_00030 helix germline (inherited) Baker 2007 DNA, RNA RT-PCR, PTT, SEQ - -
-/? Parent #2 30 c.6945C>T 6945T>C r.6945c>u p.= COL6A3_00031 helix germline (inherited) Baker 2007 DNA, RNA RT-PCR, PTT, SEQ - -
-/? Parent #1 30 c.6945C>T 6945T>C r.6945c>u p.= COL6A3_00031 helix germline (inherited) Baker 2007 DNA, RNA RT-PCR, PTT, SEQ - -
-/? Parent #2 36 c.7292A>T 7292T>A r.7292a>u p.Asp2431Val COL6A3_00032 C1 germline (inherited) Baker 2007 DNA, RNA RT-PCR, PTT, SEQ - -
-/? Parent #1 36 c.7292A>T 7292T>A r.7292a>u p.Asp2431Val COL6A3_00032 C1 germline (inherited) Baker 2007 DNA, RNA RT-PCR, PTT, SEQ - -
-/? Unknown 36 c.7357G>A - r.7357g>a p.Glu2453Lys COL6A3_00033 also in unaffected relatives; C1 germline (inherited) Baker 2007 DNA, RNA RT-PCR, PTT, SEQ - -
-/? Unknown 36 c.7596G>A - r.7596g>a p.= COL6A3_00035 C1 germline (inherited) Baker 2007 DNA, RNA RT-PCR, PTT, SEQ - -
-/? Parent #2 38 c.7842C>T 7842T>C r.7842c>u p.= COL6A3_00036 C2 germline (inherited) Baker 2007 DNA, RNA RT-PCR, PTT, SEQ - -
-/? Parent #1 38 c.7842C>T 7842T>C r.7842c>u p.= COL6A3_00036 C2 germline (inherited) Baker 2007 DNA, RNA RT-PCR, PTT, SEQ - -
-/? Parent #2 38 c.8451A>G 8451G>A r.8451a>g p.= COL6A3_00039 C2 germline (inherited) Baker 2007 DNA, RNA RT-PCR, PTT, SEQ - -
-/? Parent #1 38 c.8451A>G 8451G>A r.8451a>g p.= COL6A3_00039 C2 germline (inherited) Baker 2007 DNA, RNA RT-PCR, PTT, SEQ - -
-/? Unknown 39 c.8491G>C - r.8491g>c p.Asp2831His COL6A3_00040 C2 germline (inherited) Baker 2007 DNA, RNA RT-PCR, PTT, SEQ - -
-/? Parent #2 40 c.8780T>C - r.8780u>c p.Met2927Thr COL6A3_00041 C3 germline (inherited) Baker 2007 DNA, RNA RT-PCR, PTT, SEQ - -
-/? Parent #1 40 c.8780T>C - r.8780u>c p.Met2927Thr COL6A3_00041 C3 germline (inherited) Baker 2007 DNA, RNA RT-PCR, PTT, SEQ - -
-/? Parent #2 40 c.8820G>A - r.8820g>a p.= COL6A3_00042 C3 germline (inherited) Baker 2007 DNA, RNA RT-PCR, PTT, SEQ - -
-/? Parent #1 40 c.8820G>A - r.8820g>a p.= COL6A3_00042 C3 germline (inherited) Baker 2007 DNA, RNA RT-PCR, PTT, SEQ - -
-/? Parent #2 40 c.8962A>G 8959G>A (Val2987Met) r.8962a>g p.Met2988Val COL6A3_00044 C3 germline (inherited) Baker 2007 DNA, RNA RT-PCR, PTT, SEQ - -
-/? Parent #1 40 c.8962A>G 8959G>A (Val2987Met) r.8962a>g p.Met2988Val COL6A3_00044 C3 germline (inherited) Baker 2007 DNA, RNA RT-PCR, PTT, SEQ - -
-/? Unknown 41 c.9034G>C 9031C>G (Pro3011Ala) r.9034g>c p.Ala3012Pro COL6A3_00045 C4 germline (inherited) Baker 2007 DNA, RNA RT-PCR, PTT, SEQ - -

2 entries in EMD

Path.
Allele Descending
Ascending
Exon Descending
Ascending
DNA change Descending
Ascending
Var_pub_as Descending
Ascending
RNA change Descending
Ascending
Protein change Descending
Ascending
DB-ID Descending
Ascending
Variant remarks Descending
Ascending
Genet_ori Descending
Ascending
Segregation Descending
Ascending
Reference Descending
Ascending
Template Descending
Ascending
Technique Descending
Ascending
Frequency Descending
Ascending
RE-site Descending
Ascending
+/? Parent #2 1_6 c.0 - r.0 p.0 EMD_00000 no paternal X-chromosome unknown - - DNA SEQ - -
-/? Parent #1 1_6 c.= - r.= p.= EMD_00000 normal 2nd X-chromosome germline (inherited) - - DNA SEQ - -

1 entry in LMNA

Path.
Allele Descending
Ascending
Exon Descending
Ascending
DNA change Descending
Ascending
Var_pub_as Descending
Ascending
RNA change Descending
Ascending
Protein change Descending
Ascending
DB-ID Descending
Ascending
Variant remarks Descending
Ascending
Genet_ori Descending
Ascending
Segregation Descending
Ascending
Reference Descending
Ascending
Template Descending
Ascending
Technique Descending
Ascending
Frequency Descending
Ascending
RE-site Descending
Ascending
-/? Unknown 1_12 c.= - r.= p.= LMNA_00000 no variants 2nd chromosome germline (inherited) - - DNA SEQ - -