LOVD SETX homepage

General information
Gene name senataxin
Gene symbol SETX
Chromosome Location 9q34
Database location the Leiden Muscular Dystrophy pages
Curator Johan den Dunnen
PubMed references View all (unique) PubMed references in the SETX database
Date of creation May 23, 2012
Last update March 29, 2013
Version SETX130329
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Genomic refseq ID NG_007946.1
Transcript refseq ID NM_015046.5
Total number of unique DNA variants reported 12
Total number of individuals with variant(s) 12
Total number of variants reported 12
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NOTE Variants involved in Inherited Peripheral Neuropathies are also collected by the IPNMDB. All variants submitted here will be shared with the IPNMDB.

Graphical displays and utilities
Summary tables Summary of all sequence variants in the SETX database, sorted by type of variant (with graphical displays and statistics)
UCSC Genome Browser Show variants in the UCSC Genome Browser (compact view)
Ensembl Genome Browser Show variants in the Ensembl Genome Browser (compact view)
NCBI Sequence Viewer Show distribution histogram of variants in the NCBI Sequence Viewer

Sequence variant tables
Unique sequence variants Listing of all unique sequence variants in the SETX database, without patient data
Complete sequence variant listing Listing of all sequence variants in the SETX database
Variants with no known pathogenicity Listing of all SETX variants reported to have no noticeable phenotypic effect (note: excluding variants of unknown effect)

Search the database
By type of variant View all sequence variants of a certain type
Simple search Query the database by selecting the most important variables (exon number, type of variant, disease phenotype)
Advanced search Query the database by selecting a combination of variables
Based on patient origin View all variants based on your patient origin search terms
Search through hidden entries Find the number of variant entries in the database (including hidden entries) matching your search terms.

Links to other resources
HGNC 445
Entrez Gene 23064
OMIM - Gene 608465
OMIM - Disease #1 Spinocerebellar ataxia, autosomal recessive, type 1
OMIM - Disease #2 Amyotrophic lateral sclerosis, type 4, juvenile
UniProtKB (SwissProt/TrEMBL) Q7Z3J6
HGMD SETX
GeneCards SETX
GeneTests SETX

Copyright & disclaimer
The contents of this LOVD database are the intellectual property of the respective curator(s). Any unauthorised use, copying, storage or distribution of this material without written permission from the curator(s) will lead to copyright infringement with possible ensuing litigation. Copyright © 2014. All Rights Reserved. For further details, refer to Directive 96/9/EC of the European Parliament and the Council of March 11 (1996) on the legal protection of databases.

We have used all reasonable efforts to ensure that the information displayed on these pages and contained in the databases is of high quality. We make no warranty, express or implied, as to its accuracy or that the information is fit for a particular purpose, and will not be held responsible for any consequences arising out of any inaccuracies or omissions. Individuals, organisations and companies which use this database do so on the understanding that no liability whatsoever either direct or indirect shall rest upon the curator(s) or any of their employees or agents for the effects of any product, process or method that may be produced or adopted by any part, notwithstanding that the formulation of such product, process or method may be based upon information here provided.