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DMD (dystrophin) sequences: gene, mRNA and protein

(last modified January 31, 2004)

Contents

• DMD (dystrophin)
  • genomic sequences
  • mRNA sequnces
  • protein sequences
• dystrophin-like sequences

Genomic sequences

• human
  • DMD-gene - annotations only
  • DMD-gene - complete genomic Reference Sequence (NOTE: 3.5 Mb file)
            (available on request)
  • overview of DMD sequences in GenBank - includes links to all individual exons / introns of the overall DMD genomic Reference Sequence
• mouse
• rat
• zebra fish

mRNA sequences

• human  (for full annotations see Dp427m)
  • Dp427l   - GenBank NM_004007 (from the lymphocyte promoter)
            recent data doubt existence, Wheway & Roberts [2003]
  • Dp427c  - GenBank NM_000109 (from the brain promoter)
  • Dp427m - GenBank NM_004006 (from the muscle promoter)
  • Dp427p (from the Purkinje promoter)
    • Dp427p1  -  GenBank NM_004009
    • Dp427p2  -  GenBank NM_004010
  • Dp260   - GenBank (from the retina promoter)
    • Dp260-1  -  GenBank NM_004011
    • Dp260-2  -  GenBank NM_004012
  • Dp140 (from CNS promoter)
    • Dp140      -  GenBankNM_004013
    • Dp140ab  -  GenBank NM_004022
    • Dp140b    -  GenBank NM_004021
    • Dp140c    -  GenBank NM_004020
    • Dp140bc  -  GenBank NM_004023
  • Dp116   - GenBank NM_004014 (from the Schwann cell promoter)
  • Dp71 (from the liver promoter)
    • Dp71      -  GenBank NM_004015
    • Dp71a    -  GenBank NM_004017
    • Dp71b    -  GenBank NM_004016
    • Dp71ab  -  GenBank NM_004018
  • Dp40     - GenBank NM_004019 (from the liver promoter)
• zebra fish [Brachydanio rerio]

protein sequences

• human  (for full annotations see Dp427m)                   SWISS-PROT: P11532
  • Dp427l     - GenBank NP_003998
            recent data doubt existence, Wheway & Roberts [2003]
  • Dp427c    - GenBank NP_000100
  • Dp427m   - GenBank NP_003997
  • Dp427p    - GenBank  (Dp427p1), NP_004001 (Dp427p2)
  • Dp260      - GenBank NP_004002 (Dp260-1), NP_004003 (Dp260-2)
  • Dp140      - GenBank NP_004004 (Dp140)
    • smaller isoforms NP_004013 (Dp140ab), NP_004012 (Dp140b), NP_004011 (Dp140c),  NP_004014 (Dp140bc)
  • Dp116      - GenBank NP_004005
  • Dp71        - GenBank NP_004006
    • smaller isoforms (Dp71), NP_004008 (Dp71a), NP_004007 (Dp71b), NP_004009 (Dp71ab) 
  • Dp40        - GenBank NP_004010
• mouse [Mus musculus] - NP_031894   SWISS-PROT: P11531
• rat [Rattus norvegicus] - gi:346983
• rabbit [Oryctolagus cuniculus] - PIR S44417
• dog [Canis familiaris] - O97592
• chicken [Gallus gallus] - CAA31746   SWISS-PROT: P11533
• African clawed frog [Xenopus laevis] - gi:3046812
• zebra fish [Brachydanio rerio]
• dogfish, catshark [Scyliorhinus canicula] - gi:3046783
• Pacific electric ray [Torpedo californica] - gi:397971

Dystrophin-like proteins

• utrophin
• starfishes [Asteroidea] - gi:3046702
• scallops [Pectinidae] - gi:3046767
• amphioxus [Branchiostoma lanceolatum] - gi:3046729
• sea urchin [Strongylocentrotus purpuratus]
  • Dp98 (Dp116) - CAA11279
  • su  (Dp427) - AAK20664
• [Ciona intestinalis] - gi:3046714
• fruit fly [Drosophila melanogaster]
  • DLP1  (Dp427c) - AAK15258
  • DLP2  (Dp427m) - AAK15256 / AAG17395
  • DLP3  (Dp427p) - AAK18176
  • DLP186  (Dp116) - AAK15257
• [Caenorhabditis elegans] - gi:3892157, gi:3876575

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